Download CellMethMarker datasets
Download curated cell/tissue-specific DNA methylation marker datasets, sample metadata, and processed sample-level BigWig methylation tracks used in CellMethMarker.
Available datasets
These files include custom markers, literature-derived public markers, hg38-compatible liftOver marker files, and sample-level metadata.
| Dataset | Content | Genome build | Format | Download |
|---|---|---|---|---|
|
Custom markers
|
Cell/tissue-specific DNA methylation markers generated from the curated WGBS and RRBS custom datasets. | hg19 | CSV | Download |
|
Literature markers
Primary online version
|
Curated DNA methylation markers collected from published literature and public marker resources. This file is harmonized to the primary CellMethMarker online coordinate framework. | hg19 | CSV | Download |
|
Literature markers
hg38 liftOver version
|
hg38-compatible liftOver version of the literature-derived marker file, prepared to support interoperability with current genome resources. | hg38 | CSV | Download |
|
Sample metadata
|
Metadata for samples included in CellMethMarker, including platform and cell/tissue annotations. | Not applicable | CSV | Download |
Genome coordinate support
CellMethMarker uses hg19 as the primary online coordinate system, consistent with the majority of literature-derived markers and the custom marker discovery workflow. To support current genome resources, an hg38 liftOver version of the literature marker file is also provided.
Sample methylation profiles
Browse and download processed RRBS-family and WGBS sample-level BigWig tracks corresponding to the individual-sample methylation profiles displayed in the CellMethMarker Genome Browser.
| Sample ID | Assay | Cell / tissue type | Dataset / series | Size | Download |
|---|---|---|---|---|---|
